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git stashwill not stash files for which there are no history. So if you have files which you have not yet added but which would be overwritten or "created" by the merge, then the merge will still block. In that situation, you can usegit stash -uto stash uncommitted files too. Or you can just delete them!git clean -dfxwas a terrible idea. Removed some .gitignored files I actually needed.git reset --hard, still had unmerged changes!git update-index --assume-unchanged C:\...\.gitignoreI had to change it to track changes again so I could usegit stashas in:git update-index --no-assume-unchanged C:\...\.gitignoreThen the above worked great!git checkout filenameawesome point