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Relative path can only be used from the toplevel of the working tree. I'm doinggit submodule add ../../../functestRelative path can only be used from the toplevel of the working tree") is not the one from the original question ("You need to run this command from the toplevel of the working tree")$wt_prefix(the working tree prefix): here, as I mention in my previous answer (stackoverflow.com/a/1974381/6309), it is the location relative to the superproject's origin repository. See this comment: stackoverflow.com/questions/1974181/…. But an absolute path would be easier.