I have a program that writes info in the screen, does some stuff, prints again, and so on. For example, the program is julia MWE.jl, where MWE.jl is the file for ii=1:50 println("ii=",ii)...

I'm trying to install flash attention 2.8.2 on a Centos 7 SLURM GPU cluster. But as the login node does not have NVCC, direct installation at login node is not successful. Direct installation command: ...

I am trying to set up a workflow using nextflow v.25.04.7, but I am having issues with the -withLabel options. Here is the relevant code in nextflow.config: process { executor = "slurm" ...

I am trying to use VS Code (from a Windows laptop) to: SSH into the institutional cluster (which uses SLURM). Launch an interactive session with srun --pty -N1 -n1 --mem=4G --time=03:00:00 /bin/bash (...

Is @ray.remote def run_experiment(...): (...) if __name__ == '__main__': ray.init() exp_config = sys.argv[1] params_tuples, num_cpus, num_gpus = load_exp_config(exp_config) ray.get(...

I am currently using Snakemake version 9.6.3 on a cluster managed by an SLURM scheduler. In previous workflows, I relied on version 6, which supported the --cluster, --cluster-status, and --parsable ...

I am currently running a slurm job file on an array that I manually set the size of, e.g. sbatch --array=1-6 myjob.array the size of the array is determined when setting up the code to run. E.g. if I ...

I'm working on Slurm 24.11.5 and have Slurmrestd installed. When using provided RESTful API, I noticed that /slurm/{version}/job/{job_id} won't work and always responds with an error message of "...

I'm building a SLURM pipeline where each stage is a bash wrapper script that generates and submits SLURM jobs. Currently I'm doing complex job ID extraction which feels clunky: # Current approach ...

I am working with a complex pipeline in Snakemake running on an HPC cluster managed by SLURM. My workflow runs across multiple servers with varying capacities. While Snakemake's distribution of jobs ...

Given: #!/bin/bash #SBATCH --account=project_XXX #SBATCH --job-name=test #SBATCH --output=/scratch/project_XXX/ImACCESS/trash/logs/%x_%a_%N_%j_%A.out #SBATCH [email protected] #SBATCH -...

I am trying to test future.batchtools for parallelisation in R. I have a small test job (run_futurebatchtools_job.R) as: library(future) library(future.batchtools) # Set up the future plan to use ...

I am currently trying to use Ray with Slurm. According to Depolying on slurm, I have the following slurm script: #!/bin/bash #SBATCH --account=xxx #SBATCH --job-name=test #SBATCH -o job.%j.out ...

I’ve been using salloc to allocate compute nodes without issues before. Recently, after switching to another user account (same .bashrc config, only the conda path changed), salloc stopped working. I ...

It is not possible for me to give you a minimal reproducible example because I have no idea why or even how this is happening. But I can give you a sample of the error messages. So basically there I'm ...