Skip to content
Navigation Menu
Toggle navigation
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Spark
Build and deploy intelligent apps
GitHub Models
Manage and compare prompts
MCP Registry
New
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
Accelerator
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search or jump to...
Search code, repositories, users, issues, pull requests...
Search syntax tips
Provide feedback
Saved searches
Use saved searches to filter your results more quickly
Sign in
Sign up
Appearance settings
Resetting focus
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
khersameesh24
/
modules
Public
forked from
nf-core/modules
Notifications
You must be signed in to change notification settings
Fork
1
Star
0
Code
Pull requests
0
Actions
Projects
Security
0
Insights
Additional navigation options
Code
Pull requests
Actions
Projects
Security
Insights
Commits
Branch selector
master
User selector
All users
All time
Commit History
Commits on Sep 12, 2025
Revert "Automated nf-test snapshot update workflow (#9026)" (#9051)
Show description for 86fc8a6
ewels
authored
86fc8a6
Copy full SHA for 86fc8a6
Revert: --update-snapshot makes the tests pass (#9050)
ewels
authored
22cb35b
Copy full SHA for 22cb35b
Snapshots artefacts: only upload modified files (#9049)
ewels
authored
3784c50
Copy full SHA for 3784c50
Add Sawfish discover (#8992)
Show description for 79e07ba
3 people
authored
79e07ba
Copy full SHA for 79e07ba
more snapshots tomfoolery (#9047)
Show description for e4760ca
ewels
authored
e4760ca
Copy full SHA for e4760ca
chore(deps): update github actions
renovate[bot]
authored
837b44c
Copy full SHA for 837b44c
chore(deps): pin dependencies
renovate[bot]
authored
9d02043
Copy full SHA for 9d02043
Allow JasmineSV to take `bai` (#9046)
Show description for a70dc7e
awgymer
authored
a70dc7e
Copy full SHA for a70dc7e
Update and improve CLAIR3 (#8964)
Show description for ce30f33
awgymer
authored
ce30f33
Copy full SHA for ce30f33
Commits on Sep 11, 2025
Fix HOSTILE_CLEAN index input (#9037)
Show description for cbe28fb
jfy133
and
SPPearce
authored
cbe28fb
Copy full SHA for cbe28fb
Rewrite script to find uploaded snapshot artefacts (#9038)
ewels
authored
c534903
Copy full SHA for c534903
Remove the snapshots helper comment (#9036)
ewels
authored
21e3cfe
Copy full SHA for 21e3cfe
bulk bump samtools modules (#9025)
Show description for c8be52d
matthdsm
and
nf-core-bot
authored
c8be52d
Copy full SHA for c8be52d
bump sourmash versions to 4.9.4 (#9030)
Show description for 30c7ada
Midnighter
and
jfy133
authored
30c7ada
Copy full SHA for 30c7ada
Actions permissions (#9035)
Show description for 297f9c7
ewels
authored
297f9c7
Copy full SHA for 297f9c7
Give permissions to GHA workflows to write comments and stuff (#9032)
ewels
authored
59b01bc
Copy full SHA for 59b01bc
Automated nf-test snapshot update workflow (#9026)
Show description for b0f5b07
ewels
authored
b0f5b07
Copy full SHA for b0f5b07
Update HOSTILE modules to 2.0.2 (#9029)
Show description for f9e0c75
jfy133
and
SPPearce
authored
f9e0c75
Copy full SHA for f9e0c75
Bump paraphase to 3.3.4 (#9028)
Show description for 9e18969
fellen31
authored
9e18969
Copy full SHA for 9e18969
Collect more genome statistics in the `last` module (#9004)
Show description for 033f2d2
charles-plessy
authored
033f2d2
Copy full SHA for 033f2d2
Commits on Sep 10, 2025
update utils_nfschema_plugin to 2.5.1 (#8984)
Show description for 4b406a7
nvnieuwk
authored
4b406a7
Copy full SHA for 4b406a7
Update to correct malformed version (#9024)
DLBPointon
authored
83f6c07
Copy full SHA for 83f6c07
add stub to pear (#9023)
Show description for 6ebefdf
nvnieuwk
authored
6ebefdf
Copy full SHA for 6ebefdf
Update gatk4 mutect2 to add --alleles parameter for force calling (#9020)
Show description for 3dbb6ed
jchchiu
authored
3dbb6ed
Copy full SHA for 3dbb6ed
Commits on Sep 9, 2025
feat: add CRISPRESSO2 module (#8973)
Show description for c63da05
sathyasjali
and
mirpedrol
authored
c63da05
Copy full SHA for c63da05
Modernize arm profiles (#8821)
Show description for f3f40b1
edmundmiller
and
claude
authored
f3f40b1
Copy full SHA for f3f40b1
Dp24 blobtk (#8998)
Show description for bc4bd80
DLBPointon
authored
bc4bd80
Copy full SHA for bc4bd80
Remove unnecessary spaces from `picard` module (#9021)
Show description for b8e9f70
bounlu
authored
b8e9f70
Copy full SHA for b8e9f70
Update multiqc to 1.31 (#9015)
Show description for e10b76c
khersameesh24
and
maxulysse
authored
e10b76c
Copy full SHA for e10b76c
Commits on Sep 8, 2025
Nextflow Language Server Compliance for Freec Modules (#9017)
Show description for b9cec8b
FriederikeHanssen
authored
b9cec8b
Copy full SHA for b9cec8b
Stop language server complaining about ichorcna (#9018)
SPPearce
authored
4412c4b
Copy full SHA for 4412c4b
msisensor2/scan - fix sort (#9016)
Show description for 4906b6c
maxulysse
and
SPPearce
authored
4906b6c
Copy full SHA for 4906b6c
Update msisensor2/scan and msisensor2/msi (#9005)
Show description for 3dd258a
maxulysse
and
SPPearce
authored
3dd258a
Copy full SHA for 3dd258a
Add --columns-file argument to bcftools annotate (#9000)
Show description for 28438d3
heuermh
authored
28438d3
Copy full SHA for 28438d3
Commits on Sep 7, 2025
8705 picardcollecthsmetrics fails for gzipped genomes (#8974)
Show description for bd597f1
shivangi-7
authored
bd597f1
Copy full SHA for bd597f1
Pagination
Previous
Next
You can’t perform that action at this time.
![renovate[bot]](https://avatars.githubusercontent.com/in/2740?v=4&size=32){kind=avatar}
