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Open source code for AlphaFold 2.
AlphaFold 3 inference pipeline.
Official repository for the Boltz biomolecular interaction models
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
A comprehensive library for computational molecular biology
Making Protein Design accessible to all via Google Colab!
Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
A fully open source biomolecular structure prediction model based on AlphaFold3
DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (built on La-Proteina) with inference-time optimization.
Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
Automatic atomic model building program for cryo-EM maps
PINDER: The Protein INteraction Dataset and Evaluation Resource
BindCraft modified to make PyRosetta use and installation optional: no license needed
Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
It's a package for evaluation of predicted poses, right?
HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structures by leveraging the forward pass of a structure prediction m…
A comprehensive foundation model for cryo-EM image processing
protein structure generation with sparse all-atom denoising models