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Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

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Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/MIGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

replaced http://mathematica.stackexchange.com/ with https://mathematica.stackexchange.com/
Source Link

Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

RLink does not play well with igraph objectsRLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

Update: I am no longer maintaining IGraphR. I recommend that you transition to IGraph/M instead. If you need a feature that IGraph/M does not yet have, please submit a feature request.


I wrote a small package for this. The main reason why I'm posting it here is to get some feedback on how to improve it. I'm new both R and RLink.

You can get the package here. Please see the installation instructions in README.md, especially if you're a Mac user (important!).

###How does it work?

RLink does not play well with igraph objects, so an edge-list representation is used to transfer data between R and Mathematica. Using a simple edge-list is good for performance and transparency too. On the R side, edge lists are marked with the mmaDirectedGraph attribtue. On the Mathematica side, Graph objects are auto-converted to R edge lists using RLink's RDataTypeRegister mechanism.

The function to be called and the argument list are passed separately to R. On the R side a function takes care of converting the egde lists to proper igraph objects, and then calls the function. If the return value is a graph, it also converts that back to an edge list.

###Usage examples

Mac users will need to load RLink like this first (again, follow the instructions on github!!):

<< RLink` SetEnvironment[ "DYLD_LIBRARY_PATH" -> "/Library/Frameworks/R.Framework/Resources/lib"]; InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources"] 

Note: if using Mathematica 10.0.1, also specify the R version, e.g.

InstallR["RHomeLocation" -> "/Library/Frameworks/R.Framework/Resources", "RVersion" -> "3.1"] 

Examples:

IGraph["vertex.connectivity"][CycleGraph[5]] (* ==> {2.} *) IGraph["barabasi.game"][50] 

enter image description here

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Szabolcs
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  • 1.3k
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  • 238.9k
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  • 653
  • 1.3k
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  • 653
  • 1.3k
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