Open Source Python Earth Sciences Software for Mac

GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts.

DeepChem aims to provide a high-quality open-source toolchain that democratizes the use of deep learning in drug discovery, materials science, quantum chemistry, and biology. DeepChem currently supports Python 3.7 through 3.9 and requires these packages on any condition. DeepChem has a number of "soft" requirements. If you face some errors like ImportError: This class requires XXXX, you may need to install some packages. Deepchem provides support for TensorFlow, PyTorch, JAX and each requires an individual pip Installation. The DeepChem project maintains an extensive collection of tutorials. All tutorials are designed to be run on Google collab (or locally if you prefer). Tutorials are arranged in a suggested learning sequence that will take you from beginner to proficient at molecular machine learning and computational biology more broadly.

ALAMODE is designed for analyzing lattice anharmonicity and lattice thermal conductivity of solids. By using an external DFT package such as VASP and Quantum ESPRESSO, you can extract harmonic and anharmonic force constants straightforwardly with ALAMODE. Using the anharmonic force constants, you can also calculate lattice thermal conductivity from first principles. For more information about ALAMODE, please visit the following webpages: Documentation : http://alamode.readthedocs.io/en/latest/ git repository : https://github.com/ttadano/alamode

GEOMS2 is a geostatistics and geosciences modeling software. Provides interface for grid (mesh), point, surface and data (non-spatial) objects. It has a 3D viewer and 2D plots using the well known Python engines Mayavi and Matplotlib. It has several functions to manipulate your data as well as provide univariate and multivariate analysis. NOTE: The software is still an early beta. Please tell us if you found a bug. Download datasets for students of Geostatistics 2017 (Petroleum Engineering): https://sourceforge.net/projects/geoms2/files/Geostatistics_Petroleum.zip/download Download datasets for students of Geostatistics 2017 (Geology and Mining Engineering): https://sourceforge.net/projects/geoms2/files/Geostatistics_Mining.zip/download Old: http://sourceforge.net/projects/geoms2/files/SETS_geoestatistica2_2015.7z/download https://sites.google.com/site/cmrpsoftware/downloads/Quarry_sets.7z?attredirects=0&d=1 http://sourceforge.net/projects/geoms2/files/Mining.7z/download

PyRadmon Reborn. This project started after the original programmers quit supporting it. The project now contains support for audio*, has a version that supports two Geiger counters** and a cleaner, more stable code. * = PyAudio is used as library for the audio support. ** = The two counters both run in their own thread. UPDATE-2015-2: * Added timeouts to sockets to prevent crashing of the script. * Updated some comments. UPDATE-2015-1: Since there have been some passed time I decided to pickup the keyboard to write for PyRadmon again, hence the new updates. Most significant changes: * Added a logger for catching and storing messages to a log file. * Complete cosmetic overhaul, fixing ugliness throughout the code, in the hope others might find it easier to read/more standardized.

Spectral Python (SPy) is a python package for reading, viewing, manipulating, and classifying hyperspectral image (HSI) data. SPy includes functions for clustering, dimensionality reduction, supervised classification, and more.

ccplot is an open source command-line program for plotting profile, layer and earth view data sets from CloudSat, CALIPSO and Aqua MODIS products.

This application provides a web based visual browser for NetCDF files. The application provides a simple and friendly user interface for getting a quick overview of the data contained in the files.

An editor for stratigraphic column charts.

A python-based system to diagnosis and make weather maps (wxmap) of numerical weather prediction models using the Grid Analysis and Display System (GrADS) from opengrads.org

Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!

ResistPy is a Python program designed to work with R2 & R3t for processing, modelling & visualization of electrical resistivity data. ResistPy reads a variety of raw data formats and helps the user prepare the data for modelling with R2 or R3.

WEST (Wind Energy Simulation Toolkit) is a wind simulation application. It can be use to obtain high resolution results at various altitudes.

The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A genetic algorithm and Markov simulations are currently implemented.

A web-based LIMS (Laboratory Information Management System) · Built in Plone · Professionally supported · Making waves · bi:ka (Zulu): tell it as it is More information and links to manuals, user forums, support and translations are available at https://www.bikalims.org/support-and-service-provision Bika community: www.bikalims.org Main project sponsor, Bika Lab Systems: www.bikalabs.com Inquiries: lemoene@bikalabs.com

This is a repository for software that is needed to communicate with the data loggers of CORK borehole observatories (mlterm) and to convert and post-process the data. Have a look at http://www.corkobservatories.org/ for an introduction to CORKs.

Echoproc is a piece of scientific analysis software used to extract physical ice sheet characteristics from radio echograms from experiments like the Center for the Remote sensing of ice sheets (https://www.cresis.ku.edu/)

Electronics schematics, PCB images, firmware and documentation to create and deploy a network of ecology related sensors.

Add-ons to the ECMWF GRIB API. This project is about developing and maintaining add-ons to the GRIB API, like language bindings or documentation. The main GRIB API page is at http://www.ecmwf.int/products/data/software/grib_api.html

GmshMorph is a tool to be used with GMSH, the meshing program by Christophe Geuzaine and Jean-François Remacle, for oceanographic and land-based fluid dynamics modelling. The program shapes meshes produced by GMSH to fit specified contour data.

Homepage & docs: http://marcoalopez.github.io/GrainSizeTools/ GrainSizeTools is a free, open-source, cross-platform script written in Python that provides several tools for (1) estimating average grain size in polycrystalline materials, (2) characterizing the nature of the distribution of grain sizes (either from apparent distributions or approximating 3D grain size distributions via stereology), and estimating differential stress via paleopizometers. The script requires as the input the areas of the grain profiles measured grain-by-grain on planar sections and does not require previous experience with Python programming language (see documentation below and FAQ). For users with coding skills, the script is organized in a modular way facilitating the reuse and code extension. Lopez-Sanchez, MA (2018). GrainSizeTools: a Python script for grain size analysis and paleopiezometry based on grain size. Journal of Open Source Software, 3(30), 863, https://doi.org/10.21105/joss.00863

This is a python package that allows one to easily create timelines in object-oriented python which later renders to HTML.

HistogramsApp is a Python 3.6 application that generates (KDE and PDP) from geochronological data .HistogramsApp allows to interactively setup plot parameters such as the bandwidth and the peak detection sensibility. To cite the application please refer to: 1) https://www.tandfonline.com/doi/abs/10.1080/00206814.2021.1954556?journalCode=tigr20 Rodriguez-Corcho, A. F., Rojas-Agramonte, Y., Barrera-Gonzalez, J. A., Marroquin-Gomez, M. P., Bonilla-Correa, S., Izquierdo-Camacho, D., ... & Montes, C. (2021). The Colombian geochronological database (CGD). International Geology Review, 1-35. And the Zenodo repository where the source code is available: 2) Rodriguez Corcho (2021). andresrcorcho/CGD_HistogramsApp: HistogramsApp_1.5 (1.5). Zenodo. https://doi.org/10.5281/zenodo.5171646 (https://zenodo.org/record/5171646#.YZ4X9r3P27M)

Methods and testing of methods for automatic analysis of in situ cyclic voltammetry data. This, at least initially, is the code from my masters thesis, which was done as a contribution to a larger project called Aevum. Aevum is being developed at t

Set of python scripts that can be used for the calculations of equilibrium fractionation factors from experiments and from statistical mechanics theory. python scripts use Scipy/Numpy/Matplotlib/WxPython for calculations, plotting and the GUI