seqgene

An analysis pipeline for mining exome-Seq and RNA-Seq data, focusing on quality control, SNP identification and annotation, RNA quantification, differentially expressed genes analysis, eqtl, and pathway analysis. http://seqgene.sourceforge.net

Project Activity

See All Activity >

Follow seqgene

seqgene Web Site

Other Useful Business Software

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Rate This Project

User Reviews

Be the first to post a review of seqgene!

Additional Project Details

Registered

2010-01-20

Report inappropriate content

Recommended Projects

RNASeq-MATS
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http://rnaseq-mats.sourceforge.net.
OmicSelector
Feature selection and deep learning modeling for omic biomarker study
kallisto
Near-optimal RNA-Seq quantification
RSeQC
RNA-seq data QC
APAtrap
Identification of APA sites from RNA-seq data