Timeline for Running Python script over multiple directories and multiple files
Current License: CC BY-SA 4.0
36 events
| when toggle format | what | by | license | comment | |
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| yesterday | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
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| Oct 12, 2019 at 5:00 | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
| Jun 8, 2019 at 23:12 | comment | added | RonJohn | Why not wrap it in the bash find command? | |
| Jun 8, 2019 at 23:01 | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
| Jan 24, 2019 at 2:00 | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
| Dec 16, 2018 at 11:44 | history | edited | Rui F Ribeiro | CC BY-SA 4.0 | deleted 25 characters in body |
| Aug 14, 2014 at 21:54 | comment | added | Jeff | It takes file names. For example I have a folder. Let's pick Staph1 folder. Under Staph1 folder there could be folder CO1 and CO2. Under these folders there will be a .fna and a .faa file. I want to run my script on the .fna and .faa file in the CO1 folder and I would also like to run my script on the .fna and .faa file in the CO2 folder. Once this is complete, then I want to move onto the next parent folder, which would be Staph2. And so on | |
| Aug 14, 2014 at 21:48 | comment | added | Simply_Me | @Jeff does script.py takes file names or directories? Do .fna and .faa come in pairs? | |
| Aug 14, 2014 at 21:35 | history | edited | jasonwryan | CC BY-SA 3.0 | Title and formatting |
| Aug 14, 2014 at 21:31 | history | edited | Jeff | CC BY-SA 3.0 | added 304 characters in body |
| Aug 14, 2014 at 20:56 | comment | added | Cristian Ciupitu | A tree representing the directory hierarchy would be nice. | |
| Aug 14, 2014 at 20:54 | answer | added | Simply_Me | timeline score: 0 | |
| Aug 14, 2014 at 20:46 | comment | added | dg99 | You use both folder and directory in your question. Is there a difference between those two things? If so, what is the difference? Also, please edit your question to include a portion of an example directory structure for us to look at. | |
| Aug 14, 2014 at 20:38 | comment | added | Jeff | There are over 4000 genomes, each containing 1 or more contigs. would have to use my command line 4000+ times just to get the files i need. | |
| Aug 14, 2014 at 20:23 | comment | added | iruvar | Did you code script.py? Why not use os.walk to navigate the directory from within script.py? | |
| S Aug 14, 2014 at 20:21 | history | edited | iruvar | CC BY-SA 3.0 | added 10 characters in body |
| Aug 14, 2014 at 20:21 | review | Suggested edits | |||
| S Aug 14, 2014 at 20:21 | |||||
| Aug 14, 2014 at 20:20 | review | First posts | |||
| Aug 14, 2014 at 20:21 | |||||
| Aug 14, 2014 at 20:20 | history | asked | Jeff | CC BY-SA 3.0 |