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rsyncalone can't do this - but you could usefindto construct an exclude file for rsync. e.g. starting with something likefind . -name .protect -printf '%h/***\n'./simulation_v002/***but this will then still end up including files it shouldn'trsync -a -m --remove-source-files --exclude-from='cache/exclude_list.txt' cache/ cache_trashis it possible for find to generatesimulation_v002/***instead?sed -e 's=^\./=='. don't expect one tool to do everything - it's normal to combine multiple small tools to achieve a desired result, each tool being good at its own job. find to get the list of files, sed to transform it into the required format, rsync to do th copy.