I have the same problem I've restricted permissions to read only for the '~/Library/Saved Application State' folder, it's better but applications still randomly relaunch at the next start. I say randomly because sometimes some do other don't, pretty annoying. Shortcut was working fine with 'restore' option off in 10.7.
[edit] Note that httpthe Apple support doc for OS X Mountain Lion://support.apple.com/kb/PH11242 shortcuts for shutting down and sleeping doesn't mention anymore ⌃⌥⌘⏏⌃⌥⌘⏏ as a way to shutdown your computer whilebut http://support.apple.com/kb/HT1343the Apple support doc for OS X keyboard shortcuts still dodoes.