``` 2018-11-06 09:51:27,314 /home/tb571/Downloads/pnlpipe/pnlscripts/wmql.py DEBUG Running ['/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/scripts/tract_math', '/home/tb571/Downloads/pnlpipe/_data/003_GNX_007/Ukf-003_GNX_007-761f2a551e.vtk', 'tract_remove_short_tracts', '2', '/tmp/tmpq2z9fmfc/ukfpruned.vtk'] Traceback (most recent call last): File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/scripts/tract_math", line 115, in main tractography, *args.operation_parameters) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tract_math/decorator.py", line 141, in wrapper process_output(out, file_output=file_output) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tract_math/decorator.py", line 176, in process_output tractography_to_file(file_output, output) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/__init__.py", line 85, in tractography_to_file return tractography_to_vtk_file(filename, tractography, **kwargs) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py", line 29, in tractography_to_vtk_file tractography.tracts_data() File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py", line 324, in write_vtkPolyData poly_data = tracts_to_vtkPolyData(tracts, tracts_data=tracts_data) File "/home/tb571/Downloads/pnlpipe/soft_dir/tract_querier-c57d670/tract_querier/tractography/vtkInterface.py", line 267, in tracts_to_vtkPolyData vtk_ids = ns.numpy_to_vtkIdTypeArray(ids, deep=True) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/vtk/util/numpy_support.py", line 198, in numpy_to_vtkIdTypeArray return numpy_to_vtk(num_array, deep, vtk.VTK_ID_TYPE) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/vtk/util/numpy_support.py", line 137, in numpy_to_vtk assert not numpy.issubdtype(z.dtype, complex), \ File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/site-packages/numpy/core/numerictypes.py", line 743, in issubdtype FutureWarning, stacklevel=2 File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line 101, in _showwarnmsg _showwarnmsg_impl(msg) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line 28, in _showwarnmsg_impl text = _formatwarnmsg(msg) File "/home/tb571/miniconda3/envs/pnlpipe3/lib/python3.6/warnings.py", line 116, in _formatwarnmsg msg.filename, msg.lineno, line= msg.line) TypeError: custom_formatwarning() got an unexpected keyword argument 'line' ```

This may be a consequence of issue26568.

> Typo/trivial mistake in warnings.py (may be related to 2.x to 3.x conversion) It's not a typo: it's that my change now requires the last argument of formatwarning() to be a keyword argument called 'line'. The error comes from numpy. But I'm fine to now require that the last formatwarning() argument is called 'line' and pass its value as an positional argument, not as a keyword argument. In that case, I would like to see an unit test to check that replacing warnings.formatwarning() with a new function and the last parameter of this function is not called 'line' still works.

@tashrifbillah I will be happy to add a test on a follow up PR attributing to the original PR as per https://github.com/python/cpython/pull/10343#issuecomment-467026474 Thanks

 New changeset be7c460fb50efe3b88a00281025d76acc62ad2fd by Victor Stinner (Xtreak) in branch 'master': bpo-35178: Fix warnings._formatwarnmsg() (GH-12033) https://github.com/python/cpython/commit/be7c460fb50efe3b88a00281025d76acc62ad2fd 

 New changeset b94874f7e27cbc92e0aec8779ee98bcb16efb257 by Miss Islington (bot) in branch '3.7': bpo-35178: Fix warnings._formatwarnmsg() (GH-12033) https://github.com/python/cpython/commit/b94874f7e27cbc92e0aec8779ee98bcb16efb257 

Thanks Tashrif Billah and Karthikeyan Singaravelan for the fix! Sadly, Python 3.6 now only accept security fixes, and so this bug cannot be fixed in the 3.6 branch anymore. The workaround is the rename the last parameter of your customer formatmsg function to 'line' ;-)