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make-framejust creates a frame displaying the current buffer. Is that what you want? Is the current buffer what you want in the new frame?C-h v ediff-window-setup-functionand go from there. (You can answer your own question if you get that working.)ediff-setup-windows-multiframe(which is called fromediff-window-setup-function) to make a frame before all the setup, but it seems to be already too late: the new frame is made, but ediff arranges the buffer still in the old frame. :-(