updated mlst scheme name

Author: hkaspersen

main.config

@@ -9,7 +9,7 @@
 // "hybrid" = Run hybrid assembly and annotation
 // "short_assembly" = Run short read assembly and annotation
 // "no_assembly" = Only run annotation of input assemblies
-params.track="short_assembly"
+params.track="no_assembly"
 
 
 
@@ -65,5 +65,5 @@ params.virfinder_db="/cluster/projects/nn9305k/src/virulencefinder_db"
 params.plasfinder_db="/cluster/projects/nn9305k/src/plasmidfinder_db"
 
 // Assembly-based MLST
-// Specify scheme used with mlst*: ecoli, ecoli_2 etc.
-params.mlst_species="ecoli"
+// Specify scheme used with mlst*: e.g. "ecoli_achtman_4"
+params.mlst_species="ecoli_achtman_4"