GitHub - amatov/ActinSegmentationModulation

Name		Name	Last commit message	Last commit date
Latest commit History 42 Commits
Gauss2D1.m		Gauss2D1.m
README.md		README.md
batch.m		batch.m
candsRoi.m		candsRoi.m
fsmDetection.tif		fsmDetection.tif
fsmPrepCheckDistance.m		fsmPrepCheckDistance.m
fsmPrepCheckInfo.m		fsmPrepCheckInfo.m
fsmPrepConfirmSpeckles.m		fsmPrepConfirmSpeckles.m
fsmPrepMainSecondarySpeckles.m		fsmPrepMainSecondarySpeckles.m
fsmPrepScaleSpace.m		fsmPrepScaleSpace.m
fsmPrepSubstructMaxima.m		fsmPrepSubstructMaxima.m
getModulation.m		getModulation.m
prepareRowData.m		prepareRowData.m
selectRectangle.m		selectRectangle.m
selectRegion.m		selectRegion.m
speckleDensity.tif		speckleDensity.tif

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The Matlab code I wrote to compute the speckle modulation for the publication:

Mike Adams, Alex Matov, Daphne Yarar, Steph Gupton, Gaudy Danuser, Clare Waterman "Signal Analysis of Total Internal Reflection Fluorescent Speckle Microscopy and Wide-Field Epi-Fluorescence FSM of the Actin Cytoskeleton and Focal Adhesions in Living Cells (2004)"

https://researchgate.net/publication/8204587_Signal_analysis_of_total_internal_reflection_fluorescent_speckle_microscopy_TIR-FSM_and_wide-field_epi-fluorescence_FSM_of_the_actin_cytoskeleton_and_focal_adhesions_in_living_cells

My software provides the number of speckles in a ROI and their mean modulation; getModulation.m is the main function