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DKFZ-ODCF
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RNAseqWorkflow
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Commit History
Commits on Jun 12, 2024
Add note on mutually exclusive RUN_KALLISTO* options.
vinjana
authored
f41259c
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Commits on Nov 13, 2023
Clarified library complexity estimation
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vinjana
authored
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Commits on Jul 3, 2023
Merge pull request #28 from DKFZ-ODCF/pre-release-4
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vinjana
authored
0950781
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Add scripts to prepare gencode annotation
NagaComBio
committed
7f1953f
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Header typo fix
NagaComBio
committed
d739e45
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Commits on Jun 30, 2023
Update featureCounts column names
NagaComBio
committed
bf29ee9
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Commits on Jun 27, 2023
Refactoring GRCh38 XML to work with refmake reference and legacy annotation
NagaComBio
committed
ac8c3d2
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Two clip3pAdapterMMp values are needed for the pairs
NagaComBio
committed
ed5112d
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Removing tbiClusterCompositeModule from xml
NagaComBio
committed
75ae384
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Commits on Sep 14, 2022
Typo fixes README
vinjana
committed
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Commits on Apr 5, 2022
Fixes in README.md.
vinjana
committed
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Commits on Feb 25, 2022
File documentation
vinjana
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Commits on Feb 3, 2022
Updated Conda environment.yaml.
vinjana
committed
989c8ee
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More smaller changes.
vinjana
committed
20313e9
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Updated versions also for hg37. Updated changelog.
vinjana
committed
dae75a6
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Envisaged changes for version 4 in README. Typo fix in config.
vinjana
committed
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Commits on Feb 2, 2022
Merge pull request #27 from DKFZ-ODCF/arriba2
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suhrig
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Commits on Jan 31, 2022
update Arriba to 2.2.1
suhrig
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7e67bdf
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Commits on Dec 20, 2021
More readable command list
vinjana
authored
b35a808
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Commits on Dec 8, 2021
Merge pull request #15 from DKFZ-ODCF/update-to-subread-1.6.5
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vinjana
authored
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Commits on Dec 7, 2021
Increased default subread version to 1.6.5.
vinjana
committed
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Commits on Oct 19, 2021
Merge pull request #13 from DKFZ-ODCF/pre-release-3.0.0
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vinjana
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Compiled binary. Code still compatible to Roddy 3.0 releases.
vinjana
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Merge pull request #12 from a-heit/Rename_columns_featureCounts_files
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vinjana
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Commits on Apr 1, 2021
Update featureCountsDexseq_2_FpkmTpm
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a-heit
authored
129a00f
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Update featureCountsDexseq_2_FpkmTpm
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a-heit
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eac1037
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Update featureCounts_2_FpkmTpm
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a-heit
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c1c8aae
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Update featureCounts_2_FpkmTpm
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a-heit
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Commits on Mar 26, 2021
Merge pull request #11 from NagaComBio/hg38
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NagaComBio
authored
131eac5
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updating readme
NagaComBio
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Commits on Mar 17, 2021
Arriba 1.2.0 database files for hg38
NagaComBio
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Commits on Mar 15, 2021
hg38 genome file
NagaComBio
committed
c7a15b2
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updating GTF parser arguments
NagaComBio
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47ad4f5
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Rolling back Arriba to 1.2.0
NagaComBio
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888a2ff
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Commits on Mar 3, 2021
Adding exit code
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