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Matter Modeling

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    $\begingroup$ Can you please provide additional information on how is the axis of the helix defined? If yes, I can write an answer with the script that you can use. $\endgroup$ Commented Apr 19, 2023 at 16:19
  • $\begingroup$ I defined the helical axis from the initial two carbon alpha atoms, and two final carbon alpha atoms. Thank you very much for your help. $\endgroup$ Commented Apr 20, 2023 at 8:30
  • $\begingroup$ Why two carbon atoms? $\endgroup$ Commented Apr 20, 2023 at 11:29
  • $\begingroup$ I don't have a specific reason for it, but is there any other way around? Shall I use more Carbon alpha, or all carbon alpha? $\endgroup$ Commented Apr 20, 2023 at 11:45
  • $\begingroup$ Can you please add an image for the system that you are studying? $\endgroup$ Commented Apr 20, 2023 at 12:48