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Note that any commits in HEAD which introduce the same textual changes as a commit in HEAD..<upstream> are omitted (i.e., a patch already accepted upstream with a different commit message or timestamp will be skipped).your proposed command should work fine.E'orF'were merged with conflicts as the diff will change.E'so it no longer introduces the same changes asE. It doesn't happen for every commit. The solutions seems to be to just usegit rebase --skipin those cases.