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So I tried to fix my Jupyter notebook (it wasn't letting me import libraries), however, it appears I made things worse. Now whenever I start the notebook, the kernel starts, and then instantly dies. The error I get is below:

[I 15:00:39.002 NotebookApp] Serving notebooks from local directory: /Users/stephanng/Documents/Coding/IPyNB [I 15:00:39.002 NotebookApp] 0 active kernels [I 15:00:39.003 NotebookApp] The Jupyter Notebook is running at: http://localhost:8888/ [I 15:00:39.003 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation). [W 15:00:43.558 NotebookApp] Notebook 157 Muon Analysis - Copy.ipynb is not trusted [I 15:00:44.045 NotebookApp] Kernel started: 152a55a1-e393-4e86-b271-859b924e6a3e /Users/stephanng/anaconda/envs/py27/bin/python: No module named _signatures; 'ipykernel' is a package and cannot be directly executed [I 15:00:47.047 NotebookApp] KernelRestarter: restarting kernel (1/5) /Users/stephanng/anaconda/envs/py27/bin/python: No module named _signatures; 'ipykernel' is a package and cannot be directly executed [I 15:00:50.059 NotebookApp] KernelRestarter: restarting kernel (2/5) /Users/stephanng/anaconda/envs/py27/bin/python: No module named _signatures; 'ipykernel' is a package and cannot be directly executed [I 15:00:53.067 NotebookApp] KernelRestarter: restarting kernel (3/5) /Users/stephanng/anaconda/envs/py27/bin/python: No module named _signatures; 'ipykernel' is a package and cannot be directly executed [W 15:00:54.257 NotebookApp] Timeout waiting for kernel_info reply from 152a55a1-e393-4e86-b271-859b924e6a3e [I 15:00:56.078 NotebookApp] KernelRestarter: restarting kernel (4/5) WARNING:root:kernel 152a55a1-e393-4e86-b271-859b924e6a3e restarted /Users/stephanng/anaconda/envs/py27/bin/python: No module named _signatures; 'ipykernel' is a package and cannot be directly executed [W 15:00:59.094 NotebookApp] KernelRestarter: restart failed [W 15:00:59.095 NotebookApp] Kernel 152a55a1-e393-4e86-b271-859b924e6a3e died, removing from map. ERROR:root:kernel 152a55a1-e393-4e86-b271-859b924e6a3e restarted failed! [W 15:00:59.116 NotebookApp] Kernel deleted before session [W 15:00:59.117 NotebookApp] 410 DELETE /api/sessions/15eb80b6-d134-4142-96fa-1b1012be280c (::1) 5.42ms referer=http://localhost:8888/notebooks/157%20Muon%20Analysis%20-%20Copy.ipynb 

Is there a way to fix this? Or should I just go about a full uninstall and reinstall? Also, how do I go about doing so? When I do sudo pip uninstall jupyter, it doesn't seem to work.

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  • It is pip uninstall jupyter-core jupyter-client notebook, but yeah, still bad idea unless you are in a virtualenv Commented Feb 4, 2016 at 23:51
  • Did you do something special to your notebook? .ipynb is not trusted means it was digitally signed somehow Commented Feb 4, 2016 at 23:54
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    I actually believe that I got it to work. I uninstalled (basically everything) including conda (by rm -rf) and then I reinstalled conda and jupyter. It seems to have worked for python2 notebooks Commented Feb 5, 2016 at 0:20
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    I would delete the kernel and re install it. Refer to this here stackoverflow.com/a/42647666/7359507 Commented Dec 27, 2017 at 3:48
  • Have you tried this - pip install "ipython[notebook]" --upgrade Commented Feb 25, 2018 at 18:42

3 Answers 3

1

This is a FAQ.

tl;dr: Do this within your notebook if you need e.g. numpy:

import sys !conda install --yes --prefix {sys.prefix} numpy 

Please refer to http://jakevdp.github.io/blog/2017/12/05/installing-python-packages-from-jupyter/ for a detailed discussion of why "import foo" in a Jupyter environment differs from "import foo" in a command line environment.

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After activating the conda environment run this command:

python -m ipykernel install --user

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0

try doing this in you terminal

pip install -U numpy

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