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    eu1 and eu2 are the same encoding fontspec calls Unicode EU1 when using xetex and EU2 when using luatex (or now has a new tuenc option to call it TU in both) it's just related to some internal syntax differences with font loading so you should not need to do anything Commented Aug 10, 2016 at 23:57
  • We need a minimal document we can compile to reproduce the warnings - ideally one warning, which you give the exact text of here to double-check we're getting the same thing. Commented Aug 11, 2016 at 23:15
  • I don't get any warnings about unknown slots. Instead, I get warnings that the feature Variant=1 is not available for Charis SIL. Commented Aug 12, 2016 at 16:32
  • @Robert THAT error has to do with the "Stylistic Set 1". I don't know why you would get that error and not the ones about small caps... Commented Aug 13, 2016 at 1:43
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    OK, I've downloaded version 5 of Charis, and they have renamed the small caps glyphs from a.SC to a.sc etc. Changing the glyph names in the file mt-CharisSIL.cfg fixes the warnings. Commented Aug 14, 2016 at 21:16