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ps -o 'cmd=' -p $(ps -o 'ppid=' -p $$)returns xfce4-terminal. So I assume that is correct. As stated above I did asleep 5; xdotool key xcommand and switched terminal windows manually, which works fine. I can switch windows with windowID and run key commands. I determined the window ID by running getactivewindow, but I have also done searches by name etc, with xdotool, and gotten the same results.