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1. theislab/ncem theislab/ncem Public

   Learning cell communication from spatial graphs of cells

   Python 115 13

2. theislab/single-cell-best-practices theislab/single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 1.2k 260

3. scverse/squidpy scverse/squidpy Public

   Spatial Single Cell Analysis in Python

   Python 555 110

4. theislab/spatial_scog_workshop_2022 theislab/spatial_scog_workshop_2022 Public

   Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022

   Jupyter Notebook 54 27

5. theislab/nicheformer theislab/nicheformer Public

   Repository for Nicheformer: a foundation model for single-cell and spatial omics

   Jupyter Notebook 158 21