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nemo

🦀 A tool for quality overview of long-read sequencing data

This tool is under active development

install

setp1: install cargo first
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh
step2: on linux or windows
git clone https://github.com/sharkLoc/nemo.git cd nemo cargo b --release # mv target/release/nemo to anywhere you want 
install latest version
cargo install --git https://github.com/sharkLoc/nemo.git

usage

nemo -- A tool for quality overview of long-read sequencing data Version: 0.1.0 Authors: sharkLoc <mmtinfo@163.com> Source code: https://github.com/sharkLoc/nemo.git Usage: nemo [OPTIONS] [FILE] Arguments: [FILE] Input long reads sequence data, or read data from stdin Options: -r, --html <FILE> Specify the output HTML report file name [default: report.html] -o, --json <FILE> Specify the output json file name [default: report.json] --log <FILE> If file name specified, write log message to this file, or write to stderr --compress-level <INT> Set compression level 1 (compress faster) - 9 (compress better) for gzip/bzip2/xz output file, just work with option -o/--json [default: 6] -v, --verbosity... Control verbosity of logging, [-v: Error, -vv: Warn, -vvv: Info, -vvvv: Debug, -vvvvv: Trace, defalut: Debug] -q, --quiet Be quiet and do not show any extra information -h, --help prints help information -V, --version prints version information Use "nemo --help" for more information

report page view:

** any bugs please report issues **💖

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A tool for quality overview of long-read sequencing data

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