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1. phac-nml/irida phac-nml/irida Public

   ⛔️ DEPRECATED Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

   Java 43 33

2. phac-nml/staramr phac-nml/staramr Public

   Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

   Python 193 30

3. genomics-data-index genomics-data-index Public

   Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.

   Python 12 1

4. snvphyl-galaxy snvphyl-galaxy Public

   Shell 2 1

5. orthomcl-pipeline orthomcl-pipeline Public

   Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/

   Perl 80 36

6. arpcard/card-live-dashboard arpcard/card-live-dashboard Public

   Python 2 2