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🦠
investigating the micro-babies
🦠
investigating the micro-babies
138 followers · 25 following

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Achievements

Achievement: Pair Extraordinairex2Achievement: Galaxy Brainx4Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Starstruck

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@opencobra @resendislab @PythonDayMX

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cdiener/README.md

Hi there 👋. I'm a microbial ecologist studying the human gut microbiome. 🦠+💻 = 💓

Our lab GitHub can be found here.

Most of my work takes place in other Github organizations.

micom-dev  openCobra  gibbons-lab  gibbons-lab 

Social

bluesky  mastodon 

Science

orcid  Google Scholar 

Languages

Python R Go CSS JavaScript C Rust

Pinned Loading

  1. Gibbons-Lab/mbtools Gibbons-Lab/mbtools Public

    R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

    R 24 9

  2. micom-dev/micom micom-dev/micom Public

    Python package to study microbial communities using metabolic modeling.

    Python 122 22

  3. opencobra/cobrapy opencobra/cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 552 235

  4. resendislab/corda resendislab/corda Public

    An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

    Python 25 8

  5. Convert image to ascii art Convert image to ascii art
    1 
    import sys; from PIL import Image; import numpy as np
    2 
     
     
     3 
    chars = np.asarray(list(' .,:;irsXA253hMHGS#9B&@'))
     
     
     4 
     
     
     5 
    if len(sys.argv) != 4: print( 'Usage: ./asciinator.py image scale factor' ); sys.exit()
     
     
     
     
     
    6.  
  6.  
     
     
     
      Gibbons-Lab/isb_course_2022 Gibbons-Lab/isb_course_2022 Public 
     
     
     Materials and presentation for the 2022 ISB Microbiome course. 
     
       Jupyter Notebook      27      13  
     
     
     
    7.