// Test usage	BoqaService service = new BoqaService(ontologyFile, annotationFile);	service.scoreItemsForTestQuery();	BOQACore.setAssociationFileType(Type.PAF);	BOQACore boqaCore = new BOQACore(ontologyFile, annotationFile);	List<Integer> queryAsBoqaIndices = new ArrayList<Integer>();	queryAsBoqaIndices.add(1);	queryAsBoqaIndices.add(2);	queryAsBoqaIndices.add(3);	List<ItemResultEntry> resultList = boqaCore.score(queryAsBoqaIndices);	for (int i = 0; i < 10; i++) {	int boqaId = resultList.get(i).getItemId();	String itemName = boqaCore.getItemName(boqaId);	double score = resultList.get(i).getScore();	System.out.println("boqaId :" + boqaId);	System.out.println("itemName :" + itemName);	System.out.println("score :" + score);	System.out.println();	} }