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1. caravagnalab/lineaGT caravagnalab/lineaGT Public

   Variational lineage inference from gene therapy assays with insertional mutagenesis and somatic mutations

   R 1

2. caravagnalab/pylineaGT caravagnalab/pylineaGT Public

   A Pyro model to perform lineage inference from Gene Therapy assays

   Jupyter Notebook 1

3. caravagnalab/bascule caravagnalab/bascule Public

   Variational inference of heterogenous somatic mutational signatures using a catalogue and non-parametric clustering

   R 1 1

4. caravagnalab/pybascule caravagnalab/pybascule Public

   Mutational signatures deconvolution via Bayesian NMF

   Python 1

5. nf-core/tumourevo nf-core/tumourevo Public

   Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

   Nextflow 20 5

6. caravagnalab/MOBSTERm caravagnalab/MOBSTERm Public

   Multivariate subclonal deconvolution

   Jupyter Notebook 1