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1. wslh-bio/dryad wslh-bio/dryad Public

   Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.

   Groovy 19 5

2. wslh-bio/spriggan wslh-bio/spriggan Public

   Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.

   Python 16 3

3. wslh-bio/SPNtypeID wslh-bio/SPNtypeID Public

   SPNtypeID is a Nextflow pipeline used for genome assembly and serotyping of Streptococcus pneumoniae.

   Python 3 1

4. wslh-bio/viralrecon wslh-bio/viralrecon Public

   Forked from nf-core/viralrecon

   Assembly and intrahost/low-frequency variant calling for viral samples

   Nextflow 1