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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 824 163

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 179 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 339 59

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 186 39

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 698 115

Repositories

Showing 10 of 388 repositories
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 2 Updated Mar 26, 2026
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Mar 25, 2026
  • PIC-SURE-Logging-Client Public

    Lightweight Java client library for sending audit events to the PIC-SURE Logging service.

    hms-dbmi/PIC-SURE-Logging-Client’s past year of commit activity
    Java 0 0 0 0 Updated Mar 25, 2026
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure’s past year of commit activity
    Java 6 Apache-2.0 3 0 6 Updated Mar 25, 2026
  • avillachlab-jenkins Public
    hms-dbmi/avillachlab-jenkins’s past year of commit activity
    Shell 5 Apache-2.0 6 0 0 Updated Mar 25, 2026
  • pic-sure-bdc-infrastructure Public
    hms-dbmi/pic-sure-bdc-infrastructure’s past year of commit activity
    HCL 5 Apache-2.0 1 0 3 Updated Mar 25, 2026
  • chromoscope Public

    Interactive multiscale visualization for structural variation in human genomes

    hms-dbmi/chromoscope’s past year of commit activity
    TypeScript 72 MIT 7 37 3 Updated Mar 25, 2026
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 1 0 5 Updated Mar 25, 2026
  • gehlenborglab-website Public

    Code for HIDIVE Lab website.

    hms-dbmi/gehlenborglab-website’s past year of commit activity
    TypeScript 10 MIT 41 12 7 Updated Mar 25, 2026
  • UNVEIL Public

    UNVEIL

    hms-dbmi/UNVEIL’s past year of commit activity
    Python 1 AGPL-3.0 0 0 2 Updated Mar 25, 2026
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