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  • Pacific Informatics
  • Ho Chi Minh City
  • 03:36 (UTC +07:00)
  • LinkedIn in/kbuidinh

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imkhoibui/README.md

Khoi Bui Dinh

  • Bioinformatics Technician at Pacific Informatics

  • Former mentee at The Biodata Developers’ (BioDev) Network

  • Studied Computer Science at Fulbright University Vietnam - Vietnam's first and only liberal arts university

  • Current interests lie in developing bioinformatics pipelines, working with single-cell and spatial omics data, and benchmarking machine learning models for phenotypic prediction.

  • My favourite works:

    • 🌕 Flowjomojo: a ReactFlow-based web-app for modules drag-and-drop to generate Nextflow pipeline. This is a project I'm contributing for st.Jude's BioHackathon.
    • 🔨 Biofetch: a Nextflow pipeline to parallely download FASTQ files from NCBI, ENA & GEO metadata
    • 🤖 Host, viral, chimeric reads extraction pipeline: An adaptation from nf-core/viralrecon to extract reads for human, viral, and host-viral reads from human RNAseq data.
  • Let's connect: Email | LinkedIn | Website

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  1. co-spatial co-spatial Public

    Nextflow 1

  2. rosalind rosalind Public

    Compilation of Rosalind problems

    Python

  3. biofetch biofetch Public

    Nextflow

  4. stjude-biohackathon/KIDS25-Team8_flowjomojo stjude-biohackathon/KIDS25-Team8_flowjomojo Public

    Flow-based workflow generation from the comfort of your browser to help you keep your flow, Jo.

    TypeScript 1