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ipediez/README.md

Irene Pérez-Díez

Senior Bioinformatician PhD Team Lead Cloud Architect

Location


About Me

PhD in Biotechnology with 6+ years of experience in NGS data analysis and computational biology. Currently leading bioinformatics strategy at tellmeGen, managing GCP infrastructure and developing production-grade genomics pipelines.

  • Cancer subtyping research (PDAC, NSCLC) using transcriptomics
  • Single-cell & bulk RNA-seq, WGS, variant analysis
  • AI/ML applied to diagnostics (cfRNA, medical imaging, NLP)
  • Former Data Wrangler at EMBL-EBI for the Human Cell Atlas
  • Published researcher in peer-reviewed journals
  • Building full-stack web applications as a side passion

Tech Stack

Bioinformatics & Data Science

Python R Bash Nextflow SQL mongoDB

Machine Learning & AI

PyTorch TensorFlow scikit-learn

Cloud & Infrastructure

Google Cloud AWS Docker Singularity

Web Development

Next.js TypeScript React Tailwind CSS Supabase


Featured Projects

Project Description Stack
Soundmark Music encyclopedia with artist discovery Next.js, Supabase, TypeScript, Last.fm API
Lespurna Band website with event integration Next.js, Tailwind CSS

Research & Publications

Peer-Reviewed Articles

Notable Projects

  • Human Cell Atlas — Data curation at EMBL-EBI
  • DeepHealth — Modelling and Testing - Deep Learning for medical imaging, EU Horizon 2020

Connect

LinkedIn

Popular repositories Loading

  1. tidytuesday tidytuesday Public

    Repo for tidytuesday or similar challenges

    R 1

  2. taller-nextflow-etse taller-nextflow-etse Public

    HTML 1

  3. ipediez.github.io ipediez.github.io Public

  4. Viewers Viewers Public

    Forked from OHIF/Viewers

    OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

    JavaScript

  5. spacy-ner-annotator spacy-ner-annotator Public

    Forked from ManivannanMurugavel/spacy-ner-annotator

    Train Spacy ner with custom dataset

    JavaScript

  6. awesome-deep-learning-papers awesome-deep-learning-papers Public

    Forked from terryum/awesome-deep-learning-papers

    The most cited deep learning papers

    TeX