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1. CNAG-Biomedical-Informatics/convert-pheno CNAG-Biomedical-Informatics/convert-pheno Public

   A software toolkit for the interconversion of standard data models for phenotypic data

   Perl 15 1

2. CNAG-Biomedical-Informatics/pheno-ranker CNAG-Biomedical-Informatics/pheno-ranker Public

   Pheno-Ranker is a tool for comparing phenotypic data structured in JSON/YAML format, such as Beacon v2 Models or Phenopackets v2, as well as CSV.

   Perl 7 1

3. CNAG-Biomedical-Informatics/beacon2-cbi-tools CNAG-Biomedical-Informatics/beacon2-cbi-tools Public

   Beacon v2 - CNAG Biomedical Informatics - Tools (Data ingestion tools)

   Perl 3

4. CNAG-Biomedical-Informatics/omop-csv-validator CNAG-Biomedical-Informatics/omop-csv-validator Public

   The OMOP CSV Validator is a CLI tool that validates CSV files against JSON schemas generated from OMOP Common Data Model (CDM) DDL fiiles

   Perl 2

5. CNAG-Biomedical-Informatics/clarid-tools CNAG-Biomedical-Informatics/clarid-tools Public

   ClarID: A Human-Readable and Compact Identifier Specification for Biomedical Metadata Integration

   Perl 2

6. CNAG-Biomedical-Informatics/cbicall CNAG-Biomedical-Informatics/cbicall Public

   CBIcall is a configuration-driven framework for reproducible variant calling in large sequencing cohorts, enabling standardized pipelines from FASTQ to analysis-ready VCFs across heterogeneous comp…

   Python 1