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    Diffusion model for synthetic microscopy data generation

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  2. Cell-TRACTR Cell-TRACTR Public

    Cell-TRACTR: A transformer-based model for end-to-end segmentation and tracking of cells in microscopy videos. Achieves state-of-the-art performance on bacterial and mammalian datasets.

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  5. CellSam2 CellSam2 Public

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    The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…

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  6. Cell-HOTA Cell-HOTA Public

    The Cell-HOTA repository is an extension of the HOTA (Higher Order Tracking Accuracy) metric, tailored specifically for evaluating cell tracking algorithms

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