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patriciatran/README.md

Hi, I'm Patricia! 👋

I am a Research Computing Professional working as a Bioinformatics and Computational Pipeline Scientist at the University of Wisconsin-Madison.

I obtained my PhD specializing in genomics, bioinformatics, and microbial ecology.

I am passionate about making computing more accessible and approachable for all learners.

🌐 Socials:

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  1. UW-Madison-Bacteriology-Bioinformatics/binning_wf UW-Madison-Bacteriology-Bioinformatics/binning_wf Public

    Pipeline to bin metagenomes into high-quality metagenomic-assembled genomes using DAGman and HTCondor.

    Shell 3

  2. variant-annotation variant-annotation Public

    Pipeline to annotate genomic variants in long-read data.

    Shell 2

  3. tnseq tnseq Public

    Analysis of Tn-Seq data.

    Shell 1

  4. MolabUW/mrsa-project-eLife2025 MolabUW/mrsa-project-eLife2025 Public

    Code for MRSA Project Mo Lab

    Shell 1 1

  5. UW-Madison-Bacteriology-Bioinformatics/16S_microbiome_wf UW-Madison-Bacteriology-Bioinformatics/16S_microbiome_wf Public

    Forked from madeline-michaelis/16S_chtc_transfer

    Pipeline to analyze 16S rRNA sequencing data using DAGman and HTCondor.

    Shell 2 1

  6. UW-Madison-Bacteriology-Bioinformatics/sr-rnaseq UW-Madison-Bacteriology-Bioinformatics/sr-rnaseq Public

    Example HTCondor Workflow to process short-read RNAseq data on CHTC

    Shell