Update snakeyaml to 2.6

[scala-steward-projectglow]

About this PR

📦 Updates org.yaml:snakeyaml from 2.2 to 2.6

Usage

✅ Please merge!

I'll automatically update this PR to resolve conflicts as long as you don't change it yourself.

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🔍 Files still referring to the old version number

The following files still refer to the old version number (2.2).
You might want to review and update them manually.

build.sbt core/src/test/scala/io/projectglow/tertiary/SampleQcExprsSuite.scala core/src/test/scala/io/projectglow/vcf/VariantContextToInternalRowConverterSuite.scala docs/source/_static/notebooks/0_setup_constants_glow.html docs/source/_static/notebooks/2_setup_metadata.html docs/source/_static/notebooks/etl/10_liftOver.html docs/source/_static/notebooks/etl/1_simulate_covariates_phenotypes_offset.html docs/source/_static/notebooks/etl/2_simulate_delta_pvcf.html docs/source/_static/notebooks/etl/3_delta_to_vcf.html docs/source/_static/notebooks/etl/6_explode_variant_dataframe.html docs/source/_static/notebooks/etl/7_etl_gff_annotations.html docs/source/_static/notebooks/etl/8_create_database_for_querying.html docs/source/_static/notebooks/etl/9_query_variant_db.html docs/source/_static/notebooks/etl/data/download_1000G.html docs/source/_static/notebooks/etl/merge-vcf.html docs/source/_static/notebooks/etl/normalizevariants.html docs/source/_static/notebooks/etl/python/functions.html docs/source/_static/notebooks/etl/sample-qc-demo.html docs/source/_static/notebooks/etl/splitmultiallelics-transformer.html docs/source/_static/notebooks/etl/variant-data.html docs/source/_static/notebooks/etl/variant-qc-demo.html docs/source/_static/notebooks/etl/vcf2delta.html docs/source/_static/notebooks/tertiary/0_ingest_vcf2delta.html docs/source/_static/notebooks/tertiary/1_quality_control.html docs/source/_static/notebooks/tertiary/2_quantitative_glowgr.html docs/source/_static/notebooks/tertiary/3_linear_gwas_glow.html docs/source/_static/notebooks/tertiary/4_binary_glowgr.html docs/source/_static/notebooks/tertiary/5_logistic_gwas_glow.html docs/source/_static/notebooks/tertiary/8_pipeline_runs_comparison.html docs/source/_static/notebooks/tertiary/binaryglowgr.html docs/source/_static/notebooks/tertiary/glowgr.html docs/source/_static/notebooks/tertiary/gwas-binary.html docs/source/_static/notebooks/tertiary/gwas-quantitative.html docs/source/_static/notebooks/tertiary/pandas-lmm.html docs/source/_static/notebooks/tertiary/parallel_bcftools_filter.html docs/source/_static/notebooks/tertiary/pipe-transformer-plink.html docs/source/_static/notebooks/tertiary/pipe-transformer-vep.html docs/source/_static/notebooks/tertiary/pipe-transformer.html functions.yml project/plugins.sbt python/glow/functions.py python/glow/gwas/tests/test_approx_firth.py test-data/1000G.phase3.broad.withGenotypes.chr20.10100000.vcf test-data/1kg_sample with spaces.vcf test-data/1kg_sample.vcf test-data/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.vcf test-data/NA12878_21_10002403.vcf test-data/biallelic.CEUTrio.HiSeq.WGS.b37.NA12878.20.21.vcf test-data/liftover/README test-data/regenie/covariates.txt test-data/regenie/example_3chr.sample test-data/regenie/fit_bin_out_2.loco test-data/regenie/phenotype.txt test-data/regenie/test_bin_out_firth_Y1.regenie test-data/regenie/test_bin_out_firth_Y2.regenie test-data/regenie/test_bin_out_half_firth_Y1.regenie test-data/regenie/test_bin_out_half_firth_Y2.regenie test-data/regenie/test_bin_out_missing_firth_Y1.regenie test-data/regenie/test_bin_out_missing_firth_Y2.regenie test-data/regenie/test_lin_out_3chr_Y1.regenie test-data/regenie/test_lin_out_3chr_Y2.regenie test-data/regenie/test_lin_out_Y1.regenie test-data/regenie/test_lin_out_Y2.regenie test-data/regenie/test_lin_out_missing_Y1.regenie test-data/regenie/test_lin_out_missing_Y2.regenie test-data/wgr/logistic-regression/cov.csv test-data/wgr/logistic-regression/test_map_irls_eqn.json test-data/wgr/logistic-regression/test_reduce_irls_eqn.json test-data/wgr/ridge-regression/X0.csv test-data/wgr/ridge-regression/X1.csv test-data/wgr/ridge-regression/X2.csv test-data/wgr/ridge-regression/pts.csv 

⚙ Adjust future updates

Add this to your .scala-steward.conf file to ignore future updates of this dependency:

updates.ignore = [ { groupId = "org.yaml", artifactId = "snakeyaml" } ] 

Or, add this to slow down future updates of this dependency:

dependencyOverrides = [{ pullRequests = { frequency = "30 days" }, dependency = { groupId = "org.yaml", artifactId = "snakeyaml" } }] 

^{labels: library-update, old-version-remains, commit-count:1}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.31%. Comparing base (0ec6197) to head (09d9ddb).

Additional details and impacted files

@@ Coverage Diff @@ ## main #795 +/- ## ======================================= Coverage 92.31% 92.31% ======================================= Files 127 127 Lines 7440 7440 Branches 602 602 ======================================= Hits 6868 6868 Misses 572 572 

Flag	Coverage Δ
unittests	92.31% <ø> (ø)

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