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Commits on Mar 10, 2021
add task.cpus to pangolin (#263)
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KevinMenden
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0218824
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Commits on Mar 9, 2021
Exchange VCF data by sarscov2 data (#261)
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KevinMenden
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Commits on Mar 8, 2021
Rename gatk/createsequencedictionary -> gatk4/createsequencedictionary (#260)
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maxulysse
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05cbbba
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Commits on Feb 25, 2021
Merge pull request #252 from MaxUlysse/master_tiddit
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maxulysse
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ea6fde0
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Commits on Feb 24, 2021
feat: add tiddit_sv module
maxulysse
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f62196a
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Fix conda version declaration
JoseEspinosa
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e9fc285
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Merge pull request #246 from drpatelh/master
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drpatelh
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50b98d5
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Add missing docs
drpatelh
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Merge pull request #248 from JoseEspinosa/fix_bcftools
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drpatelh
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ca4b4eb
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resolve merge conflicts
FriederikeHanssen
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4673c11
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Add label to bcftools processes
JoseEspinosa
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ec674bb
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Fix tools entry on yml
JoseEspinosa
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823a631
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Merge pull request #247 from JoseEspinosa/bcftools-mpileup
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JoseEspinosa
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8f4363c
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Correct yml file, add fasta to input and correct vcf on output
JoseEspinosa
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Commits on Feb 23, 2021
Merge pull request #245 from phue/bismark_deduplicate
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drpatelh
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5287fe5
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Merge pull request #220 from phue/bwameth
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drpatelh
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4703a60
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Adding label to the bcftools-mpileup process
JoseEspinosa
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138be9f
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Output log file for MultiQC
drpatelh
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89cd713
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Update ivar consensus
drpatelh
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9098ba4
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Add bcftools-mpileup module
JoseEspinosa
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035443b
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add bismark/deduplicate + tests
phue
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e73bda2
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remove todos, describe in/output
FriederikeHanssen
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bf58948
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allow fq.gz or gastq.gz as in/output
FriederikeHanssen
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4e9d728
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Remove trialing whitespace
FriederikeHanssen
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12137d6
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Remove todos
FriederikeHanssen
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e251a3b
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Add beautiful md5sums
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13733b2
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Make all these tests pass
FriederikeHanssen
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5e365d5
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Try to make a single test pass
FriederikeHanssen
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25a2a16
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Commits on Feb 22, 2021
added gatk4 revertsam
KevinMenden
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3fee38e
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adding revertsam/ fix typo in mergevcfs
KevinMenden
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efd60d9
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reformatted input to tuple
KevinMenden
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69d7bb4
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Commits on Feb 20, 2021
bwameth/align: fix fasta name retrieval
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phue
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bf0e0d8
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apply suggestions from review
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phue
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Commits on Feb 19, 2021
adding SplitNCigarReads
KevinMenden
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bb5c0ce
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Merge branch 'master' into gatk4-mergevcfs
KevinMenden
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