Skip to content

soccin/FixMultiInDel

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

35 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

FixMultiInDel

Fix problem with VCF calls multiple insertion and/or deletion events at a given position. Uses bcftools norm to do the splitting.

Examples:

  • From haplotype
 5 112174757 . GAAGA G,GGA 
  • after bcftools norm -m-
 5 112174757 . GAAGA G 5 112174757 . GAAGA GGA 
  • after normalizeInDels.py
5	112174757	.	GAAGA	G	5	112174757	.	GAA	G 

About

Fix the multiallelic indels from haplotypecaller to deal with bug with overlapping in/dels

Resources

Stars

Watchers

Forks

Packages

 
 
 

Contributors