A unified interface for AI in your terminal.

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

Public archive with access to all of my articles

A Python library for reactive programming (with kind-of working type narrowing).

native Python dataclasses for the OME data model

Simple, fast-loading, n-dimensional array viewer with minimal dependencies.

Jupyter notebooks in the terminal

image processing spreadsheet

Context-Engine MCP - Agentic Context Compression Suite

This repository contains all data, code and report.

Neuron Image Analyzer: Automated and Accurate Extraction of Neuronal Data from Low Quality Images

Experimental wrapper for Spotify API to search songs and control the web player using the cli (Feat. Puppeteer)

Software for high throughput detection and tracking of migrating neurons and neurites in live cell imaging

Autofocus by live infra-red brightfield image cross correlation

Arduino-based microscope autofocus control

A Python framework for program synthesis with a focus on Automated Machine Learning.

A framework for reconstructing neuronal morphology from optical microscopy images

Roots is a package designed to take experimentally determined morphometric data and return an artificial neuronal arbor which satisfies the user-defined parameters.

A Python package for feature extraction of neural morphologies

Development of AMS at BMSTU

ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy

Reconstruction of multiple spline with variable number of control points

Robust Autofocus Score Prediction of SEM on Magnification Based on Deep Learning System, M&M'20.

Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"

A machine learning approach for defining contrast for autofocus.

Code for the PyTorch implementation of "Spatially-Variant CNN-based Point Spread Function Estimation for Blind Deconvolution and Depth Estimation in Optical Microscopy", IEEE Transactions on Image …

Pytorch implementation of "DeepFocus: a Few-Shot Microscope Slide Auto-Focus using a Sample Invariant CNN-based Sharpness Function"