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@bio2rdf @sib-swiss @NCATS-Tangerine @MaastrichtU-IDS

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vemonet/README.md

Mostly working with knowledge graphs (RDF, SPARQL, ontologies, SHACL, RML), life sciences data, and web technologies.

๐Ÿงž Open Source contributions last year

  • modelcontextprotocol/registry - A community driven registry service for Model Context Protocol (MCP) servers.
  • RDFLib/rdflib - RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
  • RDFLib/sparqlwrapper - A wrapper for a remote SPARQL endpoint
  • graniet/llm - A powerful Rust library and CLI tool to unify and orchestrate multiple LLM, Agent and voice backends (OpenAI, Claude, Gemini, Ollama, ElevenLabs...) with a single, extensible API. Build, chain, evaluate, and serve complex multi-step AI workflows โ€” including speech-to-text, text-to-speech, completions, vision, and reasoning.
  • biopragmatics/bioregistry - ๐Ÿ“ฎ An integrative registry of biological databases, ontologies, and nomenclatures.
  • sib-swiss/sparql-llm - ๐Ÿฆœโœจ Chat system, MCP server, and reusable components to improve LLMs capabilities when generating SPARQL queries
  • IoannisNezis/Qlue-ls - A SPARQL language server
  • sib-swiss/sparql-examples - A set of SPARQL examples that are used in different SIB resources
  • sib-swiss/sparql-editor - ๐Ÿ’ซ A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.
  • rdfjs/Yasgui - Yet Another Sparql GUI

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  1. rdflib-endpoint rdflib-endpoint Public

    ๐Ÿ’ซ Deploy SPARQL endpoints from RDFLib Graphs to serve RDF files, machine learning models, or any other logic implemented in Python

    Python 93 24

  2. nanopub-rs nanopub-rs Public

    โœ๏ธ A cross-platform Rust library to sign, publish, and check Nanopublications, with bindings to Python and JS (wasm)

    Rust 20 2

  3. shapes-of-you shapes-of-you Public

    ๐Ÿ’  An index for linked open data & standard knowledge descriptions (ontologies, vocabularies, shapes, queries, mappings)

    TypeScript 45 6

  4. libre-chat libre-chat Public

    ๐Ÿฆ™ Free and Open Source Large Language Model (LLM) chatbot web UI and API. Self-hosted, offline capable and easy to setup.

    Python 165 26

  5. EmojiMart EmojiMart Public

    ๐Ÿช Modern emoji picker popup for desktop, based on Emoji Mart, built with Tauri and Svelte

    Rust 107 3

  6. ptrie ptrie Public

    Forked from aserebryakov/trie-rs

    ๐ŸŽ„ Generic trie data structure (prefix tree) in Rust, with functions to search for common prefixes and postfixes

    Rust 7 4