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PyDeface-Niftyreg

A tool to remove facial structure from MRI images.

If you find this code useful for your research, please cite the following paper:

@article{juvekar2024remind, title={{ReMIND: The Brain Resection Multimodal Imaging Database}, author={Juvekar, Parikshit and Dorent, Reuben and K{\"o}gl, Fryderyk and Torio, Erickson and Barr, Colton and Rigolo, Laura and Galvin, Colin and Jowkar, Nick and Kazi, Anees and Haouchine, Nazim and others}, journal={Scientific Data}, volume={11}, number={1}, pages={494}, year={2024}, publisher={Nature Publishing Group UK London} } 

Dependencies:

  • Niftyreg

Installation

pip install git+https://github.com/ReubenDo/pydeface-niftyreg#egg=pydeface-niftyreg 

How to use

pydeface Case001-preop-MR-3D_AX_T1_postcontrast.nii.gz --applyto Case001-preop-MR-3D_SAG_T2_SPACE.nii.gz --outfolder myresults 

License

PyDeface is licensed under MIT license.

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defacing utility for MRI images

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