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1. CellREST CellREST Public

   CellREST - Cellular Relationships in Expression-state-based Single-cell Trees

   R 2

2. NESTScore NESTScore Public

   The NEST-Score (NEighbourhood Sample homogeneiTy-Score) evaluates how well the samples in an aggregated dataset mix in a cell's neighborhood in Principal Component space.

   R 3

3. gruffi gruffi Public

   Granular Functional Filtering (Gruffi) to isolate stressed cells

   R 13 5

4. gnies/multi_match gnies/multi_match Public

   Python 1 1

5. brain_organoids_four_protocols brain_organoids_four_protocols Public

   R scripts generated to process NGS data analyzed in "Reconstitution of Human Brain Cell Diversity in Organoids via Four Protocols" (Naas et al. 2024, bioRxiv, DOI: 10.1101/2024.11.15.623576).

   R 1