Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

A Nextflow pipeline for evaluating assembly quality

Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

A nextflow pipeline for polishing CLR assemblies

A tool to filter BUSCO output into single-copy gene files for phylogenomics

scripts associated with yam genome assembly

Snakemake workflow to construct species phylogenies using BUSCOs

Run Assembly statistics on a genome assembly (BUSCO and assemblyStats and new_Assemblathon.pl)

Making BUSCO HMMs useable in Anvi'o.

A pipeline to construct phylogenetic tree using BUSCOs

Building a fully automized pipeline for phylogenomic analyses based on the BUSCO toolkit

A comparative annotation toolkit (CAT) pipeline for 301 Drosophila genomes.

Reproducible phylogenomics pipeline that builds partitioned species trees from BUSCO v5 results.

Create a SNAP model from BUSCO output

phylogeny and collinearity aware assembly evaluation toolkit.

Run multiple metagenome filtering programs using Docker containers

Docker container for W2RAP based on CentOS

Genome Annotation: Hands-on Training