I'm trying to install GDAL through pip with same version in the system. But I'm getting this error:
(app_env) user@server:~$ pip install gdal==3.0.4 Collecting gdal==3.0.4 Using cached GDAL-3.0.4.tar.gz (577 kB) Building wheels for collected packages: gdal Building wheel for gdal (setup.py) ... error ERROR: Command errored out with exit status 1: command: /home/server/.virtualenvs/wetland_env/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fek8joed cwd: /tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/ Complete output (36 lines): running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.8 copying gdal.py -> build/lib.linux-x86_64-3.8 copying ogr.py -> build/lib.linux-x86_64-3.8 copying osr.py -> build/lib.linux-x86_64-3.8 copying gdalconst.py -> build/lib.linux-x86_64-3.8 copying gdalnumeric.py -> build/lib.linux-x86_64-3.8 creating build/lib.linux-x86_64-3.8/osgeo copying osgeo/gnm.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdal.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdal_array.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdalconst.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdalnumeric.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/ogr.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/__init__.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/osr.py -> build/lib.linux-x86_64-3.8/osgeo /home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process. warnings.warn( Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py Skipping optional fixer: ws_comma Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py Skipping optional fixer: ws_comma running build_ext x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o building 'osgeo._gdal' extension creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/extensions x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c extensions/gdal_wrap.cpp -o build/temp.linux-x86_64-3.8/extensions/gdal_wrap.o -I/usr/include/gdal extensions/gdal_wrap.cpp:173:11: fatal error: Python.h: No such file or directory # include <Python.h> ^~~~~~~~~~ compilation terminated. error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 ---------------------------------------- ERROR: Failed building wheel for gdal Running setup.py clean for gdal Failed to build gdal Installing collected packages: gdal Running setup.py install for gdal ... error ERROR: Command errored out with exit status 1: command: /home/server/.virtualenvs/wetland_env/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-21n68w5w/install-record.txt --single-version-externally-managed --compile --install-headers /home/server/.virtualenvs/wetland_env/include/site/python3.8/gdal cwd: /tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/ Complete output (36 lines): running install running build running build_py creating build creating build/lib.linux-x86_64-3.8 copying gdal.py -> build/lib.linux-x86_64-3.8 copying ogr.py -> build/lib.linux-x86_64-3.8 copying osr.py -> build/lib.linux-x86_64-3.8 copying gdalconst.py -> build/lib.linux-x86_64-3.8 copying gdalnumeric.py -> build/lib.linux-x86_64-3.8 creating build/lib.linux-x86_64-3.8/osgeo copying osgeo/gnm.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdal.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdal_array.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdalconst.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/gdalnumeric.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/ogr.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/__init__.py -> build/lib.linux-x86_64-3.8/osgeo copying osgeo/osr.py -> build/lib.linux-x86_64-3.8/osgeo /home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process. warnings.warn( Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py Skipping optional fixer: ws_comma Fixing build/lib.linux-x86_64-3.8/gdal.py build/lib.linux-x86_64-3.8/ogr.py build/lib.linux-x86_64-3.8/osr.py build/lib.linux-x86_64-3.8/gdalconst.py build/lib.linux-x86_64-3.8/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/gnm.py build/lib.linux-x86_64-3.8/osgeo/gdal.py build/lib.linux-x86_64-3.8/osgeo/gdal_array.py build/lib.linux-x86_64-3.8/osgeo/gdalconst.py build/lib.linux-x86_64-3.8/osgeo/gdalnumeric.py build/lib.linux-x86_64-3.8/osgeo/ogr.py build/lib.linux-x86_64-3.8/osgeo/__init__.py build/lib.linux-x86_64-3.8/osgeo/osr.py Skipping optional fixer: ws_comma running build_ext x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c gdal_python_cxx11_test.cpp -o gdal_python_cxx11_test.o building 'osgeo._gdal' extension creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/extensions x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../../port -I../../gcore -I../../alg -I../../ogr/ -I../../ogr/ogrsf_frmts -I../../gnm -I../../apps -I/home/server/.virtualenvs/wetland_env/include -I/usr/include/python3.8 -I/home/server/.virtualenvs/wetland_env/lib/python3.8/site-packages/numpy/core/include -I/usr/include -c extensions/gdal_wrap.cpp -o build/temp.linux-x86_64-3.8/extensions/gdal_wrap.o -I/usr/include/gdal extensions/gdal_wrap.cpp:173:11: fatal error: Python.h: No such file or directory # include <Python.h> ^~~~~~~~~~ compilation terminated. error: command 'x86_64-linux-gnu-gcc' failed with exit status 1 ---------------------------------------- ERROR: Command errored out with exit status 1: /home/server/.virtualenvs/wetland_env/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g163k7vu/gdal_049a3c8408cb41aea58042c9b1cf4637/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-21n68w5w/install-record.txt --single-version-externally-managed --compile --install-headers /home/server/.virtualenvs/wetland_env/include/site/python3.8/gdal Check the logs for full command output. 
