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Rediscovering
🎯
Rediscovering
23 followers · 3 following

Sponsoring

@matplotlib

Achievements

Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: Public SponsorAchievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx2

Achievements

Achievement: StarstruckAchievement: Pair ExtraordinaireAchievement: Public SponsorAchievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx2

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  • Pro

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@EnviroSCALE @KoslickiLab

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mahmudhera/README.md
  • 👋 Hi, I’m @mahmudhera
  • 👀 I’m interested in computational biology and bioinformatics, but my expertise is in modeling problems using mathematics, and solving them using algorithms. I come from a computer science background, and love to connect CS knowledge with biological problems and applications.
  • 🌱 I’m currently working in KoslickiLab (https://koslickilab.github.io/Koslicki-lab-PSU/)
  • 📫 How to reach me: mahmudur.r@rutgers.edu, mahmudhera93@gmail.com

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  1. KoslickiLab/fmh-funprofiler KoslickiLab/fmh-funprofiler Public

    A functional profiler for metagenomes using FracMinHash

    Python 20 4

  2. KoslickiLab/frac-kmc KoslickiLab/frac-kmc Public

    Fast FracMinHash sketch generator

    C++ 4 1

  3. KoslickiLab/YACHT KoslickiLab/YACHT Public

    A mathematically characterized hypothesis test for organism presence/absence in a metagenome

    C++ 33 9

  4. KoslickiLab/sourmash_alternate_implementations KoslickiLab/sourmash_alternate_implementations Public

    Implement prefetch in cpp to investigate potential speedups

    Standard ML 3

  5. KoslickiLab/mutation-rate-ci-calculator KoslickiLab/mutation-rate-ci-calculator Public

    This software calculates a confidence interval for the mutation rate from a set of observed containment indices under a simple nucleotide mutation process.

    Python 7 1

  6. KoslickiLab/estimate_rates_using_mutation_model KoslickiLab/estimate_rates_using_mutation_model Public

    This repository computes insertion, deletion, and substitution rates simultaneously under a non-simple mutation model using k-mers

    Python 2 1