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Pull requests: nf-core/scrnaseq

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Pull requests list

handle BOM files, update test to include BOM
#511 opened Dec 2, 2025 by tgelafr-pfzr • Draft
11 tasks
1
1
Important! Template update for nf-core/tools v3.5.1
#509 opened Nov 20, 2025 by nf-core-bot Loading…
Increase default runtime limit for cellbender
#505 opened Nov 12, 2025 by aednv Loading…
4 tasks done
Fix bug with probeset and index mismatch when using cellranger multi with a probeset and without a pre-built index cellranger-multi Ready for review
#502 opened Oct 30, 2025 by tgelafr-pfzr Loading…
7 tasks done
1
@tgelafr-pfzr
10
STAR: Add support for no/multiple whitelist files enhancement New feature or request
#488 opened Aug 4, 2025 by LeonHafner Loading…
@LeonHafner
1
SmartSeq - Bugfixes
#486 opened Aug 1, 2025 by sminot Loading…
1 of 5 tasks
6
Pin anndataR to v0.1.0
#472 opened Jun 23, 2025 by lazappi Loading…
1 of 11 tasks
5
Add support for using GFF instead of GTF enhancement New feature or request
#451 opened Mar 21, 2025 by milos7250 Loading…
8 of 11 tasks
@milos7250
1
Added VDJ concatenation modules and added MuData object
#435 opened Feb 27, 2025 by saraterzo Loading…
6 of 11 tasks
4.1.0
29
Altos auto detection chemistry modules
#391 opened Nov 4, 2024 by wzheng0520 • Draft
11 tasks
4.1.0
3
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