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1. Meandering-Depths Meandering-Depths Public

   Developing and optimizing a 3D game engine from scratch using OpenGL.

   Scala 1

2. TorusEvol TorusEvol Public

   This is a Bayesian model for sequence and structure alignment of multiple proteins in a star phylogeny. The structural divergence across time is modelled by letting the dihedral angles of the backb…

   Julia

3. ArborGen ArborGen Public

   This is a Blender script for procedurally generating biological tree growth animations in 3D.

   Python

4. Dynamic-Learned-Bloom-Filters Dynamic-Learned-Bloom-Filters Public

   Experimenting with a new approach to the online insertion and deletion of data points in a learned bloom filter (a bloom filter treated as a learned model, so that the keys become training samples)

   Python 1

5. dMaSIF-ligand dMaSIF-ligand Public

   This is a Julia implementation of the dMaSIF geometric deep learning model for predicting binding affinity over protein surfaces.

   Jupyter Notebook 1

6. ChimeIsland ChimeIsland Public

   A WebGL toon-shading demo featuring a proof of concept for Meandering Depths

   JavaScript