Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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Toronto, ON

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shesmu shesmu Public

Decision-driven action launching system

Java 9 4
djerba djerba Public

Create cancer bioinformatics reports from metadata and workflow output

Python 12 4
vidarr vidarr Public

Analysis provenance tracking server

Java 1 1
data_release data_release Public

Scripts for releasing data generated at OICR to stakeholders

Python

Repositories

data_release Public
Scripts for releasing data generated at OICR to stakeholders

oicr-gsi/data_release’s past year of commit activity

Python 0 MIT 0 0 0 Updated Dec 4, 2025
configScanner Public
A tracker showing which workflows would run for a given assay. Takes in account both the setting for assays and existing checks in olives.

oicr-gsi/configScanner’s past year of commit activity

Python 0 MIT 0 0 0 Updated Dec 4, 2025
hmf_djerba Public
Djerba plugins for use with the Hartwig Medical Foundation (HMF) pipeline

oicr-gsi/hmf_djerba’s past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Dec 4, 2025
flask_ui Public
projectconfig UI

oicr-gsi/flask_ui’s past year of commit activity

Python 0 MIT 0 0 1 Updated Dec 4, 2025
vidarr Public
Analysis provenance tracking server

oicr-gsi/vidarr’s past year of commit activity

Java 1 MIT 1 0 3 Updated Dec 4, 2025
nabu Public
QC tracking for files via a web service

oicr-gsi/nabu’s past year of commit activity

JavaScript 0 MIT 0 2 4 Updated Dec 4, 2025
cardea Public
Case data API

oicr-gsi/cardea’s past year of commit activity

Java 0 Apache-2.0 0 0 0 Updated Dec 4, 2025
oicr-gsi Public
Website for Genome Sequence Informatics

oicr-gsi/oicr-gsi’s past year of commit activity

Python 0 MIT 0 0 1 Updated Dec 3, 2025
crosscheckFingerprintCaller Public
To call sequencing library swaps and matches from CrosscheckFingerprints output given OICR metadata

oicr-gsi/crosscheckFingerprintCaller’s past year of commit activity

WDL 0 0 0 1 Updated Dec 3, 2025
djerba Public
Create cancer bioinformatics reports from metadata and workflow output

oicr-gsi/djerba’s past year of commit activity

Python 12 GPL-3.0 4 10 2 Updated Dec 3, 2025

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