ICB-DCM / parPE Star 22 Code Issues Pull requests Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing. optimization systems-biology ode high-performance-computing parameter-estimation hacktoberfest dynamical-modeling sbml petab amici Updated Feb 19, 2025 C++
ICB-DCM / fiddy Star 5 Code Issues Pull requests Finite difference methods. finite-differences hacktoberfest gradient-check amici Updated Nov 24, 2025 Python
SPARCED / SPARCED Star 2 Code Issues Pull requests Discussions Mechanistic Pan-Cancer Signaling Model cell-cycle sbml proliferation dna-damage cell-biology mcf10a quantitative-systems-pharmacology apoptosis amici cancer-cell antimony mechanistic-modeling Updated Feb 17, 2025 Jupyter Notebook