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cyverseuk

Here are 35 public repositories matching this topic...

cyverseuk / Documentation

Wiki of CyVerseUK project. Tutorials and overview of technologies.

docker documentation bioinformatics tutorial wiki hpc cyverseuk agaveapi hpc-applications condor

Updated Sep 26, 2019

cyverseuk / renseq

Renseq Pacbio pipeline

docker bioinformatics cyverseuk renseq-pacbio-pipeline hpc-applications

Updated Sep 19, 2019
Shell

cyverseuk / polymarker

Dockerized Agave app for Polymarker, a SNP assay development pipeline

docker bioinformatics hpc cyverseuk polymarker snp-assay-development hpc-applications wheat wheat-genome

Updated Feb 8, 2018
Shell

cyversewarwick / cyversewarwick.github.io

A static webpage repository where the Warwick CyVerse UK team publish announcements such as workshops and tutorials.

Updated Feb 22, 2017
CSS

cyverseuk / fastq-dump

docker cyverseuk fastq-dump

Updated Mar 29, 2017
Shell

cyverseuk / templates

base templates for Dockerfile and wrappers

docker template dockerfile wrapper workshop cyverseuk agaveapi

Updated Oct 5, 2018
Dockerfile

cyverseuk / RAxML

RAxML agave app and docker image

docker hpc phylogenetics cyverseuk hpc-applications cipres

Updated Mar 27, 2017
Shell

cyverseuk / Tophat2

dockerfile bioinformatics tophat cyverseuk agaveapi samtools cyverse bowtie2

Updated May 16, 2017
Shell

cyverseuk / GWASSER

Dockerized Agave app for GWASSER, an R script for simple gwassing.

docker bioinformatics gwas hpc cyverseuk hpc-applications

Updated Jul 14, 2017
R

cyverseuk / bedtools

dockerfile bioinformatics hpc docker-image bedtools cyverseuk hpc-applications

Updated May 22, 2017
Shell

cyverseuk / sickle

dockerfile bioinformatics hpc trimming fastq cyverseuk agaveapi hpc-applications cyverse

Updated May 24, 2017
Shell

cyverseuk / cutadapt

dockerfile bioinformatics hpc cyverseuk agaveapi hpc-applications cutadapt

Updated May 8, 2017
Shell

cyverseuk / tuxedo

Tuxedo suite for up to 4 conditions

docker bioinformatics hpc tuxedo cyverseuk tuxedo-suite hpc-applications

Updated Mar 1, 2017
Python

cyverseuk / polymarker_wheat

polymarker image with wheat genome

docker bioinformatics cyverseuk polymarker wheat-genome

Updated Sep 21, 2016

cyverseuk / mrbayes

MrBayes app w/docker & mpi

docker hpc phylogenetics cyverseuk hpc-applications

Updated Mar 1, 2017
Shell

cyverseuk / ontologizer

dockerfile bioinformatics hpc ontology gene-ontology cyverseuk agaveapi hpc-applications cyverse

Updated May 16, 2017
Shell

cyverseuk / portcullis

portcullis tool by Dan Mapleson - https://github.com/maplesond/portcullis

docker bioinformatics hpc portcullis cyverseuk hpc-applications bioinformatics-analysis

Updated Mar 13, 2017
Shell

cyverseuk / Retrieve_BIP_Phenotypes

Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.

docker cyverseuk bip cyverse agave bip-api retrieve-brassica-phenotypes brassica-information-portal

Updated Apr 12, 2017
Ruby

cyverseuk / MUSCLE

dockerfile bioinformatics hpc muscle cyverseuk agaveapi hpc-applications sequence-alignment cyverse

Updated May 16, 2017
Shell

cyverseuk / samtools

dockerfile sorting bam-files bioinformatics hpc cyverseuk agaveapi samtools hpc-applications cyverse

Updated May 24, 2017
Shell

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