#
mobilome
Here are 3 public repositories matching this topic...
This tool provides a modular WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, genome assembly & profiling of the resistome, mobilome & virulome, as well as pangenome & MLST typing, BLASTn & phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis
docker microbial-genomics variant-calling cromwell modular-design wdl-workflow plasmids phylogenetic-analysis resistome virulome rmap mobilome pangenome-analysis mlst-typing eskapee
- Updated
Sep 5, 2025 - WDL
Bacterial analysis toolbox for full ESKAPEE pathogen characterisation and profiling the resistome, mobilome, virulome & phylogenomics using WGS
- Updated
Sep 28, 2020 - Shell
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